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Mr Tobias Baril

Mr Tobias Baril

PhD Researcher

 Daphne du Maurier 3052

 

Daphne du Maurier Building, University of Exeter,  Penryn Campus, Penryn, Cornwall, TR10 9FE, UK

 Office hours:

9am - 5pm Monday to Friday

Overview

BBSRC SWBio DTP PhD Student. Investigating the role of Transposable Elements in the evolution of host genomic complexity under the supervision of Dr. Alex Hayward.

Qualifications

2018 - Masters of Biochemistry (University of Southampton)

Research group links

Research

Research interests

The role of Transposable Elements in the evolution of host genomes.

Development of bioinformatics tools and pipelines for analysis of genomics data.

Publications

Key publications | Publications by category | Publications by year

Publications by category


Journal articles

Hayward A, Baril T (In Press). A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience
Baril T, Hayward A (In Press). Migrators Within Migrators: Exploring Transposable Element Dynamics in the Monarch Butterfly, Danaus plexippus. Mobile DNA Abstract.
Qu Z, Nong W, So WL, Barton-Owen T, Li Y, Li C, Leung TCN, Baril T, Wong AYP, Swale T, et al (In Press). Millipede genomes reveal unique adaptation of genes and microRNAs during myriapod evolution.  Abstract.
Doyle T, Jimenez-Guri E, Hawkes WLS, Massy R, Mantica F, Permanyer J, Cozzuto L, Hermoso Pulido T, Baril T, Hayward A, et al (2022). Genome-wide transcriptomic changes reveal the genetic pathways involved in insect migration. Mol Ecol, 31(16), 4332-4350. Abstract.  Author URL.
Mackintosh A, Laetsch DR, Baril T, Foster RG, Dincă V, Vila R, Hayward A, Lohse K (2022). The genome sequence of the lesser marbled fritillary, Brenthis ino, and evidence for a segregating neo-Z chromosome. G3 (Bethesda), 12(6). Abstract.  Author URL.
Mackintosh A, Laetsch DR, Baril T, Ebdon S, Jay P, Vila R, Hayward A, Lohse K (2022). The genome sequence of the scarce swallowtail, Iphiclides podalirius. G3 (Bethesda), 12(9). Abstract.  Author URL.
Nong W, Qu Z, Li Y, Barton-Owen T, Wong AYP, Yip HY, Lee HT, Narayana S, Baril T, Swale T, et al (2021). Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Commun Biol, 4(1). Abstract.  Author URL.
Hayward A, Vila R, Laetsch DR, Lohse K, Baril T (2021). The genome sequence of the heath fritillary, Melitaea athalia (Rottemburg, 1775). Wellcome Open Research, 6, 304-304. Abstract.
Nong W, Law STS, Wong AYP, Baril T, Swale T, Chu LM, Hayward A, Lau DTW, Hui JHL (2020). Chromosomal‐level reference genome of the incense tree. <i>Aquilaria sinensis</i>. Molecular Ecology Resources, 20(4), 971-979.
Qu Z, Nong W, Yu Y, Baril T, Yip HY, Hayward A, Hui JHL (2020). Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). BMC Genomics, 21(1). Abstract.
Qu Z, Nong W, So WL, Barton-Owen T, Li Y, Leung TCN, Li C, Baril T, Wong AYP, Swale T, et al (2020). Millipede genomes reveal unique adaptations during myriapod evolution. PLoS Biol, 18(9). Abstract.  Author URL.
Dupeyron M, Baril T, Bass C, Hayward A (2020). Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements. Mob DNA, 11 Abstract.  Author URL.
Li Y, Nong W, Baril T, Yip HY, Swale T, Hayward A, Ferrier DEK, Hui JHL (2020). Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. BMC Genomics, 21(1). Abstract.

Publications by year


In Press

Hayward A, Baril T (In Press). A draft genome sequence of the elusive giant squid, Architeuthis dux. GigaScience
Baril T, Imrie RM, Hayward A (In Press). Earl Grey: a fully automated user-friendly transposable element annotation and analysis pipeline.  Abstract.
Baril T, Imrie RM, Hayward A (In Press). Earl Grey: a fully automated user-friendly transposable element annotation and analysis pipeline.  Abstract.
Baril T, Hayward A (In Press). Migrators Within Migrators: Exploring Transposable Element Dynamics in the Monarch Butterfly, <i>Danaus plexippus</i>.  Abstract.
Baril T, Hayward A (In Press). Migrators Within Migrators: Exploring Transposable Element Dynamics in the Monarch Butterfly, Danaus plexippus. Mobile DNA Abstract.
Qu Z, Nong W, So WL, Barton-Owen T, Li Y, Li C, Leung TCN, Baril T, Wong AYP, Swale T, et al (In Press). Millipede genomes reveal unique adaptation of genes and microRNAs during myriapod evolution.  Abstract.

2022

Doyle T, Jimenez-Guri E, Hawkes WLS, Massy R, Mantica F, Permanyer J, Cozzuto L, Hermoso Pulido T, Baril T, Hayward A, et al (2022). Genome-wide transcriptomic changes reveal the genetic pathways involved in insect migration. Mol Ecol, 31(16), 4332-4350. Abstract.  Author URL.
Baril T (2022). Investigating the Role of Transposable Elements in the Evolution of Host Genomic Complexity.  Abstract.
Mackintosh A, Laetsch DR, Baril T, Foster RG, Dincă V, Vila R, Hayward A, Lohse K (2022). The genome sequence of the lesser marbled fritillary, Brenthis ino, and evidence for a segregating neo-Z chromosome. G3 (Bethesda), 12(6). Abstract.  Author URL.
Mackintosh A, Laetsch DR, Baril T, Ebdon S, Jay P, Vila R, Hayward A, Lohse K (2022). The genome sequence of the scarce swallowtail, Iphiclides podalirius. G3 (Bethesda), 12(9). Abstract.  Author URL.

2021

Dupeyron M, Baril T, Hayward A (2021). Broadscale evolutionary analysis of eukaryotic DDE transposons.
Nong W, Qu Z, Li Y, Barton-Owen T, Wong AYP, Yip HY, Lee HT, Narayana S, Baril T, Swale T, et al (2021). Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication. Commun Biol, 4(1). Abstract.  Author URL.
Hayward A, Vila R, Laetsch DR, Lohse K, Baril T (2021). The genome sequence of the heath fritillary, Melitaea athalia (Rottemburg, 1775). Wellcome Open Research, 6, 304-304. Abstract.
Mackintosh A, Laetsch DR, Baril T, Foster R, Dincă V, Vila R, Hayward A, Lohse K (2021). The genome sequence of the lesser marbled fritillary, Brenthis ino, and evidence for a segregating neo-Z chromosome.

2020

Nong W, Law STS, Wong AYP, Baril T, Swale T, Chu LM, Hayward A, Lau DTW, Hui JHL (2020). Chromosomal-level reference genome of the incense tree Aquilaria sinensis.
Nong W, Law STS, Wong AYP, Baril T, Swale T, Chu LM, Hayward A, Lau DTW, Hui JHL (2020). Chromosomal‐level reference genome of the incense tree. <i>Aquilaria sinensis</i>. Molecular Ecology Resources, 20(4), 971-979.
Qu Z, Nong W, Yu Y, Baril T, Yip HY, Hayward A, Hui JHL (2020). Genome of the four-finger threadfin Eleutheronema tetradactylum (Perciforms: Polynemidae). BMC Genomics, 21(1). Abstract.
Qu Z, Nong W, So WL, Barton-Owen T, Li Y, Leung TCN, Li C, Baril T, Wong AYP, Swale T, et al (2020). Millipede genomes reveal unique adaptations during myriapod evolution. PLoS Biol, 18(9). Abstract.  Author URL.
Dupeyron M, Baril T, Bass C, Hayward A (2020). Phylogenetic analysis of the Tc1/mariner superfamily reveals the unexplored diversity of pogo-like elements. Mob DNA, 11 Abstract.  Author URL.
Li Y, Nong W, Baril T, Yip HY, Swale T, Hayward A, Ferrier DEK, Hui JHL (2020). Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. BMC Genomics, 21(1). Abstract.

Tobias_Baril Details from cache as at 2022-12-05 15:09:58

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